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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6281732_6283012_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6281732 - 6283012
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CCGCCCGTGACC
Flanking Amino Acid:
EDAVLCCSMELQSTGRLLEE
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
70.2
0.46
1
65.4
36.3
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
47.3
-0.2
2.1
54.6
44.1

Associated Gene:

Gene:
CTIF
Ensembl Gene ID:
ENSAPLG00000014486
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020569
6281516 - 6398377
116862
ENSAPLT00000015086
6281516 - 6398377
116862
ENSAPLT00000007009
6281516 - 6398377
116862
ENSAPLT00000048002
6281516 - 6398377
116862