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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62882020_62885396_R

Intron Information:

Intron Rank:
141366
Intron Class:
major
Intron Phase:
Intron Coordinates:
62882020 - 62885396
Intron Length:
3377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTATTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.3
0.86
0.7
81.5
36
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023398
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025766
62881960 - 62886178
4219