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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6293230_6307685_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6293230 - 6307685
Intron Length:
14456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTGCTGATGC
Flanking Amino Acid:
FRSLLLNMLQKDFTMREELQ
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.1
0.65
0.8
72.7
32.1
Minor 5ss
35.2
-1.7
2.7
43.3
43.5
Minor BPS
43.7
-0.5
2.3
58.72
46.2

Associated Gene:

Gene:
CTIF
Ensembl Gene ID:
ENSAPLG00000014486
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020569
6281516 - 6398377
116862
ENSAPLT00000015086
6281516 - 6398377
116862
ENSAPLT00000007009
6281516 - 6398377
116862
ENSAPLT00000048002
6281516 - 6398377
116862