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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_62983522_62988115_F

Intron Information:

Intron Rank:
127135
Intron Class:
major
Intron Phase:
Intron Coordinates:
62983522 - 62988115
Intron Length:
4594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTGAGTTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
45
-0.3
2
57.42
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018538
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044757
62978094 - 63003278
25185