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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63064951_63070018_R

Intron Information:

Intron Rank:
153818
Intron Class:
major
Intron Phase:
Intron Coordinates:
63064951 - 63070018
Intron Length:
5068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
ATGGTCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGCTCCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
66.3
0.37
0.9
63.1
38.9
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
49.8
0.07
2
71.82
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046970
63064379 - 63070126
5748