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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63064951_63073283_R

Intron Information:

Intron Rank:
153812
Intron Class:
major
Intron Phase:
Intron Coordinates:
63064951 - 63073283
Intron Length:
8333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATGGTCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGCTCCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
66.3
0.37
0.9
63.1
38.9
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
49.8
0.07
2
71.82
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028916
63064379 - 63073488
9110