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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63070165_63073283_R

Intron Information:

Intron Rank:
153816
Intron Class:
major
Intron Phase:
Intron Coordinates:
63070165 - 63073283
Intron Length:
3119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCTGACATAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
45.2
-0.2
2
65.61
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045007
63064379 - 63073488
9110