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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63101411_63103226_F

Intron Information:

Intron Rank:
150373
Intron Class:
major
Intron Phase:
Intron Coordinates:
63101411 - 63103226
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
51.3
0.12
1.9
75.11
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030818
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034657
63101299 - 63131316
30018