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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63103274_63131215_F

Intron Information:

Intron Rank:
150374
Intron Class:
major
Intron Phase:
Intron Coordinates:
63103274 - 63131215
Intron Length:
27942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATACGGTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TGTTGTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
62.2
0.27
1
58.3
42.3
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
70.4
0.64
1.7
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030818
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034657
63101299 - 63131316
30018