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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63184492_63185005_R

Intron Information:

Intron Rank:
152538
Intron Class:
major
Intron Phase:
Intron Coordinates:
63184492 - 63185005
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TTTCCCCCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
50
0
1.2
61.8
35.9
Major PPT
70.1
0.45
0.8
61
29.3
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
48.1
-0.1
2.1
69.49
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029650
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026456
63178910 - 63185148
6239