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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63228759_63230848_F

Intron Information:

Intron Rank:
147513
Intron Class:
major
Intron Phase:
Intron Coordinates:
63228759 - 63230848
Intron Length:
2090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.9
0.9
0.6
88.1
21.8
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
56.2
0.28
1.8
75.91
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029443
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038848
63228388 - 63236194
7807