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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63230984_63235954_F

Intron Information:

Intron Rank:
147514
Intron Class:
major
Intron Phase:
Intron Coordinates:
63230984 - 63235954
Intron Length:
4971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TCTTTTCACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.7
0.69
0.8
76.6
31.1
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029443
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038848
63228388 - 63236194
7807