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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6331140_6354310_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6331140 - 6354310
Intron Length:
23171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TATCTTGGAATT
Flanking Amino Acid:
DIEKVLPVWQGYHPLPHEAE
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79
0.65
0.9
72.3
36.5
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
46.1
-0.2
2
66.75
38.3

Associated Gene:

Gene:
CTIF
Ensembl Gene ID:
ENSAPLG00000014486
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020569
6281516 - 6398377
116862
ENSAPLT00000015086
6281516 - 6398377
116862
ENSAPLT00000007009
6281516 - 6398377
116862
ENSAPLT00000048002
6281516 - 6398377
116862