About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63410909_63411475_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63410909 - 63411475
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGTTTACCT
Flanking Amino Acid:
VSPVLMHSYPGAYLSPGFHY
Intron Amino Acid Position:
1369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81
0.7
0.8
74.1
35.7
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
59
0.36
2
80.6
41.6

Associated Gene:

Gene:
ZNF608
Ensembl Gene ID:
ENSAPLG00000016239
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017776
63335554 - 63415205
79652
ENSAPLT00000016941
63337592 - 63458488
120897
ENSAPLT00000021658
63335554 - 63416879
81326