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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63414088_63415198_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63414088 - 63415198
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CATACTAAAACA
Flanking Amino Acid:
SATGMFPAQRRE*
Intron Amino Acid Position:
1505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
46.4
-0.2
1.9
57.95
41.5

Associated Gene:

Gene:
ZNF608
Ensembl Gene ID:
ENSAPLG00000016239
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017776
63335554 - 63415205
79652