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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63414088_63458421_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63414088 - 63458421
Intron Length:
44334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTGGAAAAAAAT
Flanking Amino Acid:
SATGMFPAQRRSFLEILTSC
Intron Amino Acid Position:
1505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
54
0.1
1
59.7
32.6
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
36.8
-0.9
2.2
56.37
45.2

Associated Gene:

Gene:
ZNF608
Ensembl Gene ID:
ENSAPLG00000016239
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016941
63337592 - 63458488
120897