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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63520707_63538385_R

Intron Information:

Intron Rank:
153969
Intron Class:
major
Intron Phase:
Intron Coordinates:
63520707 - 63538385
Intron Length:
17679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
TAATTTTCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTTACTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.7
37.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.5
0.64
0.8
73.6
36.5
Minor 5ss
39.4
-1.2
2.8
43.7
43.9
Minor BPS
65.9
0.58
1.6
81.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030321
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017786
63520598 - 63544162
23565