Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6362258_6372094_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6362258 - 6372094

Intron Length:

9837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

TTGTTGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTAAA

U12 Branch Point Sequence:

CTGCCCTCGACT

Flanking Amino Acid:

KGSSSHEHNQEEWDHSSGGS

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

59.8

0.24

1.2

61.9

33.9

Major PPT

84.8

0.78

0.9

76.9

42.1

Minor 5ss

-1.9

3.6

46.2

49.1

Minor BPS

58.7

0.35

1.7

73.07

43.9

Associated Gene:

Gene:

CTIF

Ensembl Gene ID:

ENSAPLG00000014486

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048002

6281516 - 6398377

116862