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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63814614_63815719_R

Intron Information:

Intron Rank:
143420
Intron Class:
major
Intron Phase:
Intron Coordinates:
63814614 - 63815719
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
76.6
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.9
0.74
0.9
76.7
36.2
Minor 5ss
30.5
-2.2
3.2
36.4
42
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024469
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048459
63812294 - 63816008
3715