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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63882920_63883293_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63882920 - 63883293
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TCTTTCTGTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCCCTTACTC
Flanking Amino Acid:
PAEVEVTDETNCEKVLNMCY
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
32.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80
0.67
0.8
76.3
32.4
Minor 5ss
52.3
0.08
2.3
68
36.6
Minor BPS
70.5
0.62
1.6
79.77
35.4

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003100
63878371 - 63937474
59104