About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63883401_63888902_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63883401 - 63888902
Intron Length:
5502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
CTGGTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ACTAGCATAACT
Flanking Amino Acid:
AADRHGGSVQVVSSTNGELN
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
74.1
0.6
1
69
38.9
Major PPT
70.6
0.46
1
66.1
44.1
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
49.9
0.08
2.1
72.16
44.3

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035570
63878371 - 63937474
59104
ENSAPLT00000003100
63878371 - 63937474
59104
ENSAPLT00000043650
63877040 - 63945791
68752
ENSAPLT00000038280
63877040 - 63945791
68752