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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63888999_63889674_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
63888999 - 63889674
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
AAAAAAAACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGCCTATTT
Flanking Amino Acid:
RDKMQQSKNQATDHRAAWNS
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
46
-0.2
1
30.4
34.3
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
50.1
0.08
2.3
80.43
41.9

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038280
63877040 - 63945791
68752
ENSAPLT00000035570
63878371 - 63937474
59104
ENSAPLT00000003100
63878371 - 63937474
59104
ENSAPLT00000043650
63877040 - 63945791
68752