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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63891007_63894027_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63891007 - 63894027
Intron Length:
3021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
SIEVLCENFPEEMATYLRYV
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.2
0.66
0.8
76.5
31.1
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035570
63878371 - 63937474
59104
ENSAPLT00000003100
63878371 - 63937474
59104
ENSAPLT00000043650
63877040 - 63945791
68752
ENSAPLT00000038280
63877040 - 63945791
68752