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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63894113_63894245_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63894113 - 63894245
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAGTT
5'SS Class:
major
3'SS Sequence:
TCTTTTATCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGCTCTTTTATC
Flanking Amino Acid:
RGSLPWQGLKAETLKERYQK
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
71.8
38.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
80.7
0.69
0.7
76.9
30.3
Minor 5ss
35
-1.7
3.8
55.8
48.4
Minor BPS
59.7
0.29
1.6
66.72
39.4

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038280
63877040 - 63945791
68752
ENSAPLT00000035570
63878371 - 63937474
59104
ENSAPLT00000003100
63878371 - 63937474
59104
ENSAPLT00000043650
63877040 - 63945791
68752