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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63905618_63921555_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63905618 - 63921555
Intron Length:
15938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTCTCTTTTACA
Flanking Amino Acid:
YRFYKQLGAGDGLPQVYYFG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
87.9
0.85
0.7
82.7
25.9
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
63.9
0.43
1.7
70.65
41.9

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003100
63878371 - 63937474
59104
ENSAPLT00000043650
63877040 - 63945791
68752
ENSAPLT00000035570
63878371 - 63937474
59104