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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63905618_63932221_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63905618 - 63932221
Intron Length:
26604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTCTCTTTTACA
Flanking Amino Acid:
GGGNFGELRLDGLPQVYYFG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
87.9
0.85
0.7
82.7
25.9
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
63.9
0.43
1.7
70.65
41.9

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038280
63877040 - 63945791
68752