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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63927765_63932221_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63927765 - 63932221
Intron Length:
4457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTGTTTTCAAG
Flanking Amino Acid:
GGGNFGELRLGNNLYTNEHV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
80.3
0.68
1
79.2
38.4
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
47.4
-0.3
2
59.29
43.1

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043650
63877040 - 63945791
68752
ENSAPLT00000035570
63878371 - 63937474
59104
ENSAPLT00000003100
63878371 - 63937474
59104