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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63932653_63937404_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
63932653 - 63937404
Intron Length:
4752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.5
0.84
0.8
84.9
28.4
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
CSNK1G3
Ensembl Gene ID:
ENSAPLG00000003019
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038280
63877040 - 63945791
68752
ENSAPLT00000035570
63878371 - 63937474
59104
ENSAPLT00000003100
63878371 - 63937474
59104
ENSAPLT00000043650
63877040 - 63945791
68752