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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63970967_63974948_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63970967 - 63974948
Intron Length:
3982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGAC
5'SS Class:
major
3'SS Sequence:
CACTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTATTACAC
Flanking Amino Acid:
MVSKDKVSQGRYFPKRPKY
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.7
39.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.8
0.56
0.9
68.4
37
Minor 5ss
37.1
-1.5
3.4
51.5
45.7
Minor BPS
45.6
-0.3
1.9
57.85
40.6

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001877
63970939 - 64011383
40445
ENSAPLT00000036875
63970939 - 63978545
7607
ENSAPLT00000019109
63970939 - 64011383
40445