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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63975106_63976030_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63975106 - 63976030
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTG
5'SS Class:
major
3'SS Sequence:
AATGTTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCAACTGAAAT
Flanking Amino Acid:
ELDRKALHQHRLQRTPIKLQ
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
69.9
41.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.2
0.61
0.9
69.6
40.8
Minor 5ss
39.6
-1.2
3.5
55.7
48.5
Minor BPS
51.3
0.12
1.8
72.47
43.4

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042036
63973442 - 64011383
37942
ENSAPLT00000036875
63970939 - 63978545
7607
ENSAPLT00000019109
63970939 - 64011383
40445
ENSAPLT00000001877
63970939 - 64011383
40445