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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63976146_63977078_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63976146 - 63977078
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTAAAAT
Flanking Amino Acid:
DLRAVQEKKQTPKWYPLLSN
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.7
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.3
0.79
0.9
81.4
35.3
Minor 5ss
38.3
-1.3
2.9
49.3
46.5
Minor BPS
51.5
0.12
1.8
68.86
42.4

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042036
63973442 - 64011383
37942
ENSAPLT00000036875
63970939 - 63978545
7607
ENSAPLT00000019109
63970939 - 64011383
40445
ENSAPLT00000001877
63970939 - 64011383
40445