Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63977225_63978466_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

63977225 - 63978466

Intron Length:

1242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAACATGC

5'SS Class:

major

3'SS Sequence:

GAAGTCAAACAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAGTCAA

U12 Branch Point Sequence:

TTTCTGTGGAGA

Flanking Amino Acid:

KEAPPREGRGNLQASCVFTI

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.2

60.6

39.8

Major BPS

0.23

1.1

61.4

36.2

Major PPT

44.8

-0.3

1.1

33.1

39.3

Minor 5ss

45.5

-0.5

2.9

59.6

39.4

Minor BPS

42.3

-0.6

2.3

59.87

40.1

Associated Gene:

Gene:

CEP120

Ensembl Gene ID:

ENSAPLG00000001549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036875

63970939 - 63978545

7607