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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63984289_63984513_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63984289 - 63984513
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGGCT
5'SS Class:
major
3'SS Sequence:
TCAGCCTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATCTCTTCAGCC
Flanking Amino Acid:
VLQKETLNVQPLIPLNAPNE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
65.5
38.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
72.7
0.51
0.9
65.1
36.1
Minor 5ss
37.3
-1.4
3.7
56.2
48.2
Minor BPS
52.8
0.07
1.8
64.85
41

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042036
63973442 - 64011383
37942
ENSAPLT00000019109
63970939 - 64011383
40445
ENSAPLT00000001877
63970939 - 64011383
40445