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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63984722_63987367_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
63984722 - 63987367
Intron Length:
2646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
GATGCTGCACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTGTTTTCAGCT
Flanking Amino Acid:
FEKGTNLKKTIAASQSNPVG
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
31.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
57.7
0.17
1.1
48.1
44.6
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
49.5
0.04
1.8
68.32
42.9

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042036
63973442 - 64011383
37942