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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63990793_63993746_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63990793 - 63993746
Intron Length:
2954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATAACT
5'SS Class:
major
3'SS Sequence:
ATACAATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTATTTTTGACT
Flanking Amino Acid:
NETVSVTAAQGSGNRIAELS
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
71
39
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.7
0.49
1
66.9
43
Minor 5ss
35.7
-1.6
3
42.9
43.6
Minor BPS
70.1
0.71
1.1
79.87
36

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042036
63973442 - 64011383
37942
ENSAPLT00000019109
63970939 - 64011383
40445
ENSAPLT00000001877
63970939 - 64011383
40445