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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63994622_63995185_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63994622 - 63995185
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAAAG
Flanking Amino Acid:
REREALVKKKVAEYTVLEEQ
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.3
0.68
1
82.2
33.3
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
66.7
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019109
63970939 - 64011383
40445
ENSAPLT00000001877
63970939 - 64011383
40445
ENSAPLT00000042036
63973442 - 64011383
37942