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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_63995279_63996907_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63995279 - 63996907
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATGTATGAATT
Flanking Amino Acid:
ERHLFSAESELQRVKKELQA
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
71.9
0.49
1
75.5
33
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
47.9
-0
1.7
65.35
39.1

Associated Gene:

Gene:
CEP120
Ensembl Gene ID:
ENSAPLG00000001549
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019109
63970939 - 64011383
40445
ENSAPLT00000001877
63970939 - 64011383
40445
ENSAPLT00000042036
63973442 - 64011383
37942