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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64079948_64120270_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64079948 - 64120270
Intron Length:
40323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGTTCTAACT
Flanking Amino Acid:
AIRNTQHLWEIYDQDGTLQH
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.6
0.53
0.8
65.2
35.6
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
62.7
0.48
1.8
83.74
37.5

Associated Gene:

Gene:
PRDM6
Ensembl Gene ID:
ENSAPLG00000001327
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036950
64055157 - 64129169
74013