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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64111957_64120270_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64111957 - 64120270
Intron Length:
8314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CAACTCTTAAAT
Flanking Amino Acid:
AIRNTQHLWEIGQPFFQKCR
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.2
0.66
1
79.5
32.8
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
59.4
0.37
1.4
68.75
41.4

Associated Gene:

Gene:
PRDM6
Ensembl Gene ID:
ENSAPLG00000001327
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001324
64055314 - 64129169
73856