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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64160854_64163468_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
64160854 - 64163468
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
CAAAAACATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTCTCTTCACA
Flanking Amino Acid:
KRRGPSVTAKVFFDVKIGDR
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
49.6
-0
1
37.6
39.3
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
61.8
0.36
1.8
73.25
38.4

Associated Gene:

Gene:
PPIC
Ensembl Gene ID:
ENSAPLG00000000974
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001003
64160746 - 64167852
7107