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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64164137_64165746_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64164137 - 64165746
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATAC
5'SS Class:
major
3'SS Sequence:
TTTTTTATCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
GDFTAGDGSGGRSIYGEKFP
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.1
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.5
0.78
0.7
81.3
29.2
Minor 5ss
43.8
-0.7
2.9
59
45.7
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
PPIC
Ensembl Gene ID:
ENSAPLG00000000974
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001003
64160746 - 64167852
7107