Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64170488_64175144_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64170488 - 64175144

Intron Length:

4657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAATCAAA

5'SS Class:

major

3'SS Sequence:

TCTTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TAGATAATAAAG

Flanking Amino Acid:

RDPYVLPKANDDFPNVVIEG

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.1

67.3

39.6

Major BPS

70.8

0.52

70.6

31.6

Major PPT

93.5

0.98

0.6

92.3

18.1

Minor 5ss

39.2

-1.2

2.9

49.5

46.5

Minor BPS

41.4

-0.7

1.9

44.85

40.3

Associated Gene:

Gene:

SNX24

Ensembl Gene ID:

ENSAPLG00000000948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000944

64170417 - 64210887

40471