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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64177988_64209601_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64177988 - 64209601
Intron Length:
31614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAG
5'SS Class:
major
3'SS Sequence:
TTATTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
CSGTCLIFRKTVILENEELP
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.7
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
81.2
34.9
Minor 5ss
37.5
-1.4
2.4
42.3
44.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SNX24
Ensembl Gene ID:
ENSAPLG00000000948
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000944
64170417 - 64210887
40471