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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64269314_64269931_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64269314 - 64269931
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TAGTACTTAACA
Flanking Amino Acid:
LESLVQTQQQLIKYWEAFLP
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
73.9
0.54
1
71.9
38.1
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
73.6
0.74
1.5
77.94
38.3

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044070
64269145 - 64304540
35396
ENSAPLT00000041192
64269145 - 64304540
35396
ENSAPLT00000016474
64264215 - 64303384
39170