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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64270004_64270096_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64270004 - 64270096
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTAACA
Flanking Amino Acid:
TIRKEVGRFEKERVKDFKTV
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.9
85
31.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.7
0.65
1
74.5
38.9
Minor 5ss
27.9
-2.5
3.9
41.9
44.8
Minor BPS
73.2
0.73
1.5
81.71
32.6

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044070
64269145 - 64304540
35396
ENSAPLT00000041192
64269145 - 64304540
35396
ENSAPLT00000016474
64264215 - 64303384
39170