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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64270178_64272350_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64270178 - 64272350
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTGCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ATTTCTGCATGT
Flanking Amino Acid:
KDEIKEEIEEWETKVQQGEK
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.6
0.71
0.9
76.7
37.4
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
41.4
-0.5
2.4
65.98
45

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041192
64269145 - 64304540
35396