About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64272987_64273826_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64272987 - 64273826
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCATCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTTAGTAAAT
Flanking Amino Acid:
DYIRLIAAVKGVFDHRMKCW
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.2
0.52
1
65.5
39.8
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
48.3
-0
2.3
74.95
41.3

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044070
64269145 - 64304540
35396
ENSAPLT00000041192
64269145 - 64304540
35396
ENSAPLT00000016474
64264215 - 64303384
39170