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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64276225_64277506_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64276225 - 64277506
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
CATTCAATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCCCTTATTT
Flanking Amino Acid:
DLRQFLESSELPRAVNTQAL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.6
0.53
0.9
63.4
41.6
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
67.2
0.62
1.6
81.35
40.6

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044070
64269145 - 64304540
35396
ENSAPLT00000041192
64269145 - 64304540
35396
ENSAPLT00000016474
64264215 - 64303384
39170