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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64280838_64282622_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64280838 - 64282622
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTCTTCAAAG
Flanking Amino Acid:
VPPAPEKSIVGMTKVKVGKE
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
79
0.72
1
78.4
31.2
Major PPT
74
0.54
1
75.1
33
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
64.9
0.33
1.7
73.05
39.4

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044070
64269145 - 64304540
35396
ENSAPLT00000041192
64269145 - 64304540
35396
ENSAPLT00000016474
64264215 - 64303384
39170