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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64283184_64286330_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
64283184 - 64286330
Intron Length:
3147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCAGC
5'SS Class:
weak_major
3'SS Sequence:
TCCTTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTGCTAAATA
Flanking Amino Acid:
PAIFDRSREEIEEEANGDMF
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
59.7
45.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.9
0.65
0.7
72.6
32.2
Minor 5ss
54.8
0.16
2.2
69.8
40.7
Minor BPS
55.9
0.18
2.1
70.44
42.7

Associated Gene:

Gene:
SNX2
Ensembl Gene ID:
ENSAPLG00000015741
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044070
64269145 - 64304540
35396
ENSAPLT00000041192
64269145 - 64304540
35396
ENSAPLT00000016474
64264215 - 64303384
39170